CCP SyneRBI is a collaborative computational project in synergistic reconstruction for biomedical imaging. Its main software package SIRF is an open-source framework for synergistic image reconstruction.
This project has a specific target of providing a low-cost, open source technological kit to allow scientists, academics, hackers, makers or OSHW fans to hack their way to ultrasound imaging – below 500$ – at home, with no specific equipment required.
This project describes the construction of a 27 cm diameter, 50 cm long homogeneous Halbach array magnet. It consists of 23 rings, each with two layers of 12x12x12 permanent magnets. Design files are provided for those wanting to laser cut, CNC mill, or water-jet cut the positions of the magnets.…
MATLAB tool to design simple geometry gradient coils
Software application and development platform for medical image visualization, analysis, quantification, segmentation, and registration. Supports all imaging modalities, wide range of data types (surface and volumetric meshes, textured surface scans, spectrum data, points, lines, curves, tables, etc.),…
This GPA originated from a collaboration with Jason Stockmann (MGH Harvard). The device can drive up to 4 channels with max 10 A. It is controlled via a single SPI galvanically isolated connection that is also used to read information from the current sensors. Sample code for an Arduino is given that…
The hMRI-toolbox is an easy-to-use open-source and flexible tool, for qMRI data handling and processing. It allows the estimation of high-quality multi-parameter qMRI maps (longitudinal and effective transverse relaxation rates R1 and R2*, proton density PD and magnetisation transfer MT saturation),…
The Anser project provides an open-source implementation for electromagnetic tracking (EMT) with particular application to image-guided interventions. This work provides implementation schematics for an EMT system which relies on low-cost acquisition and demodulation techniques using both National…
QMRITools is written in Mathematica using Wolfram Workbench and Eclipse and contains a collection of tools and functions for processing quantitative MRI data.
An efficient and versatile numerical MRI simulator with GPU parallel acceleration
A repository that contains many Matlab scripts used to design gradient MR coils.
The Michigan Image Reconstruction Toolbox (MIRT) is a collection of open source algorithms for image reconstruction (and related imaging problems) written in Mathwork’s MATLAB language.
This modular system provides bias tees for first stage RF preamplifiers, second stage amplification, and programmable attenuation for use in MR scanners and other RF signal applications (at least up to several hundred MHz). Accommodates 32 channels and can be extended by daisy-chaining additional…
Hardware and software designs that enable performing Nuclear Magnetic Resonance experiments using the Earth’s magnetic field.
Python-based and UI-based pulse sequence design.
OCRA stands for Open-source Console for Real-time Acquisition. It is a low-cost, open-source console (hardware controller) for MRI. Conventional MRI consoles may be high cost, closed-source, and inflexible, in that it is not possible to change acquisition parameters once the scan is started. In contrast,…
A 3D Scanner based on structured light and stereo vision.
OpenICE is an initiative to create a community implementation of an Integrated Clinical Environment. The initiative encompasses not only software implementation but also an architecture for a wider clinical ecosystem to enable new avenues of clinical research. OpenICE seeks to integrate an inclusive…
Oscilloscope, Waveform Generator, Spectrum Analyzer, Logic Analyzer and Pattern Generator in one device.
Spinal Cord Toolbox is a comprehensive software for the processing and analysis of multiparametric MRI data of the spinal cord.
The scanner design is a low-cost resource for demonstrating concepts like magnetic resonance, spatial encoding, and the Fourier transform in an educational setting. A significant part of the system design is open-source.
An open-source software for quantitative MR image analysis.
A diffusion model-free framework with echo time dependence for free-water elimination and brain tissue microstructure characterization.
Direct signal control provides reduced transmision field inhomogeneity allowing to recover regions of low signal without increasing imaging time or interecho spacing.
This toolbox optimizes the acquisition protocols for spoiled gradient echo qMT sensitivity against noise and also sensitivity-regularization for robustness of a qMT parameter-of-interest.
A high dynamic range image processing algorithm which can offer enhanced contrast and feature preservation for multichannel and multisequence MRI.
This program allows to calculate the ultimate intrinsic SNR at the center of a uniform dielectric sphere, which may be used, for example, as an absolute reference to assess the performance of head coils with spherical phantoms.
This project proposes a hybrid system based on a single‐element ultrasound transducer and an MR scanner to help boost temporal resolution in real‐time MRI.
A user friendly software environment for implementing MRI pulse sequences and, exporting them to actual MRI scanners.
An MRI compatible phantom that simulates the respiration of a human subject in an automated way. A pressure probe is used in order to communicate in continuous time to Matlab the evolution of the respiratory cycle of the subject.
TOPPE is a simple, modular framework for rapid prototyping of pulse sequences on General Electric MRI scanners.
Advanced toolbox for design and analysis of radiofrequency (RF) pulses, and processing of magnetic resonance spectroscopy data.
A high‐performance Tx/Rx switch design is presented that supports high peak and high average power applications such as MR imaging, RF heating or thermal MR.
Customizable high-quality syringe pumps
R is a state-of-the-art statistical computing software with powerful graphic possibilities.
ODIN is a C++ software framework to develop and simulate magnetic resonance sequences.
GNU Octave is a high-level language, primarily intended for numerical computations.
OpenfMRI.org is a project dedicated to the free and open sharing of raw MRI datasets.
Spinach is software library for simulation of spin dynamics in large spin systems. It supports NMR, EPR, DNP, MAS, PHIP, singlet state NMR and other forms of Magnetic Resonance spectroscopy.
EEZ H24005 is a power supply that provides features of middle and high range commercial devices.
FreeSurfer is a software package for analysis and visualization of structural and functional neuroimaging data
Open-source brain-computer interface (OpenBCI) is an affordable bio-sensing system that can sample electrical activity of human body such as brain (EEG), skeletal muscle (EMG) and heart (ECG) activity.
OPENCORE NMR is an open-source toolkit for implementing an NMR spectrometer. This console has the size of a laptop computer, making it easy to transport. The cost of its parts is very low compared to the prize of commercial systems.
Gadgetron is an open source framework for medical image reconstruction. It consists of two main components: First, a modular, high performance framework for streaming data processing through a set of modules or “Gadgets”. Second, it provides a set of tool-boxes for common image reconstruction…
gpuNUFFT is an open-source GPU Library for reducing computational time of non-linearly sampled 3D/2D MRI data with direct Matlab interface.
The Berkeley Advanced Reconstruction Toolbox (BART) is a free and open-source image-reconstruction framework for Computational Magnetic Resonance Imaging. It consists of a programming library and a toolbox of command-line programs. The library provides common operations on multi-dimensional arrays,…
PowerGrid is an accelerated, open source, freely available toolkit for iterative reconstruction supporting non-Cartesian trajectories. Using high level compiler directives, GPU accelerated Fourier transform operators were implemented in a high level syntax designed to correlate with the popular Image…
openEMS is a free and open electromagnetic field solver using the FDTD method. Matlab or Octave are used as an easy and flexible scripting interface.
Open Source framework for the development and hardware-independent execution of MR pulse sequences for imaging and spectroscopy. MRI sequences can be programmed in MATLAB and executed on real hardware.
Low cost, open source, scalable, current feedback controlled coil driver circuit for matrix B0 shim coils and related applications.
Low cost, open source hardware platform for use in NMR relaxometry experiments. The platform is capable of a wide variety of relaxometry experiments comprising many magnet, coil, and sample combinations.
Open Source MRI sequence development and simulation environment
A prototype MATLAB open source software for the fast electromagnetic analysis of MRI systems.
COSI Measure is an open source multipurpose 3-axis robotic system that allows submillimeter movements for applications such as static/dynamic field mapping, CNC machinery or 3D printing.