ROAST: Realistic vOlumetric-Approach-based Simulator for Transcranial electric stimulation

Application

A fully-automated, easy-to-use toolbox for simulating and optimizing transcranial electrical stimulation

Contributors

Yu (Andy) Huang1

Maximilian Nentwich2

Takfarinas Medani3

Dalton Bermudez4

June Kang5

Estimated cost

Free

Progress

Stable release v3.0

GPL-3.0 License

ROAST: A fully automated, Realistic, vOlumetric Approach to Simulate Transcranial electric stimulation. This is an open-source tool that runs on Matlab and calls open-source software packages such as iso2mesh and getDP. Starting from an MRI structural image, it segments the full head, places virtual electrodes, generates an FEM mesh and solves for voltage and electric field distribution — at 1 mm resolution. All this in about 10-30 minutes and fully automated. It can also generate optimal stimulation montage for targeted stimulation.

ROAST features:
– fully automated, easy to use
– volumetric modeling of head anatomy
– supports major electrode layouts such as 10/20, 10/10, 10/05, BioSemi, and EGI
– supports pad, disk, and ring electrodes with customizable electrode sizes
– example dataset with one 1-mm MRI and one 0.5-mm MRI (the New York head)
– supports TES targeting
– 3D visualization of simulated and optimized electric field in the head
– detailed log of simulation parameters to help your research
– the only validated TES modeling toolbox by intracranial recording

References:

[1] Huang, Y., Datta, A., Bikson, M., Parra, L.C., Realistic vOlumetric-Approach to Simulate Transcranial Electric Stimulation — ROAST — a fully automated open-source pipeline, Journal of Neural Engineering, Vol. 16, No. 5, 2019

Publications

Huang, Y., Datta, A., Bikson, M., Parra, L.C., Realistic vOlumetric-Approach to Simulate Transcranial Electric Stimulation — ROAST — a fully automated open-source pipeline, Journal of Neural Engineering, Vol. 16, No. 5, 2019

Huang, Y., Datta, A., Bikson, M., Parra, L.C., ROAST: an open-source, fully-automated, Realistic vOlumetric-Approach-based Simulator for TES, Proceedings of the 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Honolulu, HI, July 2018 

If you use New York head to run simulation, please also cite the following:

Huang, Y., Parra, L.C., Haufe, S.,2016. The New York Head – A precise standardized volume conductor model for EEG source localization and tES targeting. NeuroImage,140, 150-162 

If you also use the targeting feature (roast_target), please cite these:

Dmochowski, J.P., Datta, A., Bikson, M., Su, Y., Parra, L.C., Optimized multi-electrode stimulation increases focality and intensity at target, Journal of Neural Engineering 8 (4), 046011, 2011 

Dmochowski, J.P., Datta, A., Huang, Y., Richardson, J.D., Bikson, M., Fridriksson, J., Parra, L.C., Targeted transcranial direct current stimulation for rehabilitation after stroke, NeuroImage, 75, 12-19, 2013 

Huang, Y., Thomas, C., Datta, A., Parra, L.C., Optimized tDCS for Targeting Multiple Brain Regions: An Integrated Implementation. Proceedings of the 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Honolulu, HI, July 2018, 3545-3548

Affiliations

1Memorial Sloan Kettering Cancer Center, CCNY-MSK Partnership for Artificial Intelligence, New York, NY;

2Biomedical Engineering, The City College of New York, New York, NY;

3Electrical and Computer Engineering, University of Southern California, Los Angeles, CA;

4Columbia University Irving Medical Center, New York, NY;

5Empathy Research Institute, Wilmington, DE

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