CoilGen – an Open Source MR Coil Layout Generator
An automated and flexible algorithm for rapid prototyping of new MR gradient and shim coil designs.
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Virtual MRI Scanner
Virtual Scanner is an end-to-end hybrid Magnetic Resonance Imaging (MRI) simulator/console designed to be zero-footprint, modular, and supported by open-source standards.
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ROAST: Realistic vOlumetric-Approach-based Simulator for Transcranial electric stimulation
Home About News Projects Wiki Search Software Simulations ROAST: Realistic vOlumetric-Approach-based Simulator for Transcranial electric stimulation Halbach MRI DesignerVirtual MRI Scanner Application A fully-automated, easy-to-use toolbox for simulating and optimizing transcranial electrical stimulation Contributors Yu (Andy) Huang1 Maximilian Nentwich2 Takfarinas Medani3 Dalton Bermudez4 June Kang5 Contact andypotatohy@gmail.com Estimated cost Free Progress Stable release v3.0 GPL-3.0 [...]
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CoSimPy – A Python EM/Circuit Cosimulation Library
Home About News Projects Wiki Search Software Simulations CoSimPy – A Python EM/Circuit Cosimulation Library MRI Compatible Wireless SensorsMRI distortion phantom Application CoSimPy is a Python library designed to offer an interface between multi-port full-wave electromagnetic simulations and external circuitry analyses. Contributors Umberto Zanovello1, Lukas Winter2, Luca Zilberti1, Frank Seifert2, Oriano Bottauscio1, Bernd Ittermann2 Contact u.zanovello@inrim.it [...]
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ThinWire – MRI Gradient Coil Design
MATLAB tool to design simple geometry gradient coils
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VeSPA – Versatile Simulation Pulses Analysis
Vespa allows users to design RF pulses, create spectral simulations and perform spectral data processing and analysis.
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3D Slicer
Software application and development platform for medical image visualization, analysis, quantification, segmentation, and registration. Supports all imaging modalities, wide range of data types (surface and volumetric meshes, textured surface scans, spectrum data, points, lines, curves, tables, etc.),…
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QMRITools – Mathematica Toolbox for quantitative MRI data
QMRITools is written in Mathematica using Wolfram Workbench and Eclipse and contains a collection of tools and functions for processing quantitative MRI data.
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MRILab – GPU accelerated MRI simulator
An efficient and versatile numerical MRI simulator with GPU parallel acceleration
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Pulseq-GPI / IMR-framework
Python-based and UI-based pulse sequence design.
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TAPAS – Translational Algorithms for Psychiatry – Advancing Science
A collection of software tools developed to support clinical neuromodeling, particularly computational psychiatry, computational neurology, and computational psychosomatics.
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DIPY – Diffusion imaging in Python
A software for computational neuroanatomy with focus on diffusion magnetic resonance imaging (dMRI) analysis. It implements a broad range of algorithms for denoising, registration, reconstruction, tracking, clustering, visualization, and statistical analysis of MRI data.
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Direct signal control – Optimal B1+ parallel transmission framework
Direct signal control provides reduced transmision field inhomogeneity allowing to recover regions of low signal without increasing imaging time or interecho spacing.
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Ultimate intrinsic SNR in a uniform sphere
This program allows to calculate the ultimate intrinsic SNR at the center of a uniform dielectric sphere, which may be used, for example, as an absolute reference to assess the performance of head coils with spherical phantoms.
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FID-A – Advanced MR spectroscopy processing and simulation
Advanced toolbox for design and analysis of radiofrequency (RF) pulses, and processing of magnetic resonance spectroscopy data.
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ODIN – Object-Oriented Development Interface for NMR
ODIN is a C++ software framework to develop and simulate magnetic resonance sequences.
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Spinach – Simulating spin dynamics
Spinach is software library for simulation of spin dynamics in large spin systems. It supports NMR, EPR, DNP, MAS, PHIP, singlet state NMR and other forms of Magnetic Resonance spectroscopy.
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openEMS – A free and open electromagnetic field solver
openEMS is a free and open electromagnetic field solver using the FDTD method. Matlab or Octave are used as an easy and flexible scripting interface.
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Minimum Field Strength Simulator
A framework for simulating low-field proton-density weighted MRI acquisitions based on high-field acquisitions, which could be used to predict the minimum B0 field strength requirements for MRI techniques. This framework would be particularly useful in the evaluation of de-noising and constrained…
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JEMRIS
Open Source MRI sequence development and simulation environment
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MARIE – Magnetic Resonance Integral Equation Suite
A prototype MATLAB open source software for the fast electromagnetic analysis of MRI systems.