1.
On 4th April 2024

MagneticReadoutProcessing

Home OSI² e.V. News Projects Search Software Other MagneticReadoutProcessing ScanHub Application MagneticReadoutProcessing is a Python library that makes it possible to store and further process raw data from magnetometers. The focus is on the processing of point clouds, on which the points are located on a circular path around a magnetic object to be viewed. [...]
2.
On

ScanHub

Home OSI² e.V. News Projects Search Software Simulations Reconstruction Image processing/visualization Lab software ScanHub UKF TractographyMagneticReadoutProcessing Application Open-source platform for MR acquisition control, data management and post-processing Contributors David Schote¹, Johannes Behrens¹, Christoph Dinh¹ Contact info@brain-link.de Estimated cost 0€ Progress under development GPL 3.0, BRAIN-LINK Commercial License Resources https://github.com/brain-link ScanHub is a cloud-based platform designed [...]
3.
4.
On 16th December 2023

pyCoilGen

Home OSI² e.V. News Projects Search Hardware Coils Software Simulations pyCoilGen Open BirdcageBuilderUKF Tractography Application Python based tool for generating MR coil layouts. It generates a connected, non-overlapping wire path for a given surface mesh or meshes and target field. Contributors Kevin Meyer, Philipp Amrein¹ Contact kevin@belapena.com Estimated cost Free Progress Stable Resources https://github.com/kev-m/pyCoilGen https://pycoilgen.readthedocs.io/en/stable/index.html [...]
5.
On 17th November 2023

Open BirdcageBuilder

Home OSI² e.V. News Projects Search Hardware design Software Open BirdcageBuilder NMRduinopyCoilGen Application Calculates first-pass capacitances to aid in construction and simulation of birdcage coils. Contributors Douglas Brantner1,2, Giuseppe Carluccio1,2, Chih-Liang Chin3, Christopher Collins1,2 Contact douglas.brantner@nyulangone.org Estimated cost Free Progress Beta 0.0.8, AGPL 3.0 License – Working, results validated against previous versions; need to update [...]
6.
7.
On 17th July 2023

DL+DiReCT – Direct Cortical Thickness Estimation using Deep Learning-based Anatomy Segmentation and Cortex Parcellation

Home OSI² e.V. News Projects Search Software Image processing/visualization DL+DiReCT – Direct Cortical Thickness Estimation using Deep Learning-based Anatomy Segmentation and Cortex Parcellation Parallel transmission implant safety testbedNMRduino Application DL+DiReCT combines a deep learning-based neuroanatomy segmentation and cortex parcellation with a diffeomorphic registration technique to measure cortical thickness from T1-weighted magnetic resonance images. Contributors Michael [...]
8.
On 8th December 2022

EPTlib – A library for electric properties tomography

Home OSI² e.V. News Projects Search Software Reconstruction EPTlib – A library for electric properties tomography 8-channel transmit/receive RF coil for 3TWireless reference implant Application EPTlib is a C++ library collecting electric properties tomography methods. It includes a terminal application for a simple ready-to-use adoption of the implemented methods. Contributors Alessandro Arduino¹ Contact a.arduino@inrim.it Estimated [...]
9.
10.
11.
12.
13.
14.
On 6th April 2022

ROAST: Realistic vOlumetric-Approach-based Simulator for Transcranial electric stimulation

Home OSI² e.V. News Projects Search Software Simulations ROAST: Realistic vOlumetric-Approach-based Simulator for Transcranial electric stimulation Halbach MRI DesignerVirtual MRI Scanner Application A fully-automated, easy-to-use toolbox for simulating and optimizing transcranial electrical stimulation Contributors Yu (Andy) Huang1 Maximilian Nentwich2 Takfarinas Medani3 Dalton Bermudez4 June Kang5 Contact andypotatohy@gmail.com Estimated cost Free Progress Stable release v3.0 GPL-3.0 [...]
15.
On

Halbach MRI Designer

Home OSI² e.V. News Projects Search Software Halbach MRI Designer MRI distortion phantomROAST: Realistic vOlumetric-Approach-based Simulator for Transcranial electric stimulation Application Create a Halbach MRI Magnet from parametric definitions Contributors Benjamin Menküc1, Lukas Winter2, Thomas O'Reilly3 Contact benjamin.menkuec@fh-dortmund.de Estimated cost Free Progress Stable release v0.2 Resources https://github.com/menkueclab/HalbachMRIDesigner This tool can create an OpenSCAD geometry of [...]
16.
17.
On 9th August 2021

Matlab toolboxes for medical image analysis

Home OSI² e.V. News Projects Search Software Image processing/visualization Matlab toolboxes for medical image analysis SyneRBIMRI Compatible Wireless Sensors Application Image registration and segmentation, diffusion-MRI reconstruction and tractography, tissue thickness measurement, etc. Contributors Iman Aganj1 Contact iaganj@mgh.harvard.edu Estimated cost Free Progress Stable release (BSD-3-Clause) Resources https://nmr.mgh.harvard.edu/~iman/software These tools are useful for the following neuro- and [...]
18.
On 26th May 2021

SyneRBI

CCP SyneRBI is a collaborative computational project in synergistic reconstruction for biomedical imaging. Its main software package SIRF is an open-source framework for synergistic image reconstruction.

19.
20.
On 2nd July 2020

AFNI (Analysis of Functional NeuroImages)

Home OSI² e.V. News Projects Search Software Image processing/visualization AFNI (Analysis of Functional NeuroImages) ThinWire – MRI Gradient Coil DesignHalbach array magnet for in vivo imaging Application Software for Analysis and Visualization of Functional Magnetic Resonance Neuroimages Contributors Robert Cox¹ Contact robertcox@mail.nih.gov Estimated cost Free Progress Software: released Resources https://afni.nimh.nih.gov/ AFNI (Analysis of Functional NeuroImages) is [...]
21.
22.
23.
24.
On 9th February 2020

HealthyPi

Home OSI² e.V. News Projects Search Other hardware (non-MR) Software HealthyPi 3D SlicerOpenVnmrJ – Open Source variant of VnmrJ 4.2 Application An open-source, multi-parameter, full fledged human body vital sign monitoring HAT for Raspberry Pi as well as standalone use. Contributors Ashwin Whitchurch¹ Contact ashwin@protocentral.com Estimated cost Total price: 250$ Progress Hardware: released Software: released [...]
25.
26.
On 7th January 2020

hMRI-toolbox

The hMRI-toolbox is an easy-to-use open-source and flexible tool, for qMRI data handling and processing. It allows the estimation of high-quality multi-parameter qMRI maps (longitudinal and effective transverse relaxation rates R1 and R2*, proton density PD and magnetisation transfer MT saturation),…

27.
28.
29.
30.
31.
32.
On 1st May 2019

MIRT

The Michigan Image Reconstruction Toolbox (MIRT) is a collection of open source algorithms for image reconstruction (and related imaging problems) written in Mathwork’s MATLAB language.

33.
34.
35.
36.
On

Bilateral Breast Fusion Algorithms

The integrated models can be used for the study of Specific Absorption Rate (SAR) and thermal analysis in radio-frequency(RF) exposure. The following methodology has the potential to be applied on any patient-based whole-body breast models.

37.
38.
39.
40.
41.
42.
43.
44.
45.
46.
47.
48.
49.
50.
51.
52.
53.
54.
55.
56.
57.
58.
59.
On 26th September 2016

Gadgetron

Gadgetron is an open source framework for medical image reconstruction. It consists of two main components: First, a modular, high performance framework for streaming data processing through a set of modules or “Gadgets”. Second, it provides a set of tool-boxes for common image reconstruction…

60.
61.
62.
63.
64.
On 8th July 2016

PowerGrid

PowerGrid is an accelerated, open source, freely available toolkit for iterative reconstruction supporting non-Cartesian trajectories. Using high level compiler directives, GPU accelerated Fourier transform operators were implemented in a high level syntax designed to correlate with the popular Image…

65.
66.
67.
68.
On 31st May 2016

Minimum Field Strength Simulator

A framework for simulating low-field proton-density weighted MRI acquisitions based on high-field acquisitions, which could be used to predict the minimum B0 field strength requirements for MRI techniques. This framework would be particularly useful in the evaluation of de-noising and constrained…

69.
70.