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On 8th November 2024

LIBRE_hub upcoming live workshop

The Latin American Hub for Bioimaging Through Open Hardware (LIBRE_hub) is a training network for open source bioimaging hardware in Latin America with the goal to empower regional researchers through practical workshops, seminars, networking, and online resources adapted to local needs and re-published…

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On 2nd October 2024

LIBRE_hub upcoming online seminar

The Latin American Hub for Bioimaging Through Open Hardware (LIBRE_hub) is a training network for open source bioimaging hardware in Latin America with the goal to empower regional researchers through practical workshops, seminars, networking, and online resources adapted to local needs and re-published…

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On 5th June 2024

LIBRE_hub upcoming workshop

Home OSI² e.V. News Projects Search On LIBRE_hub upcoming workshopOpen-Source MRI Scanner challenges MedTech conventions at Hannover Messe 2024LIBRE_hub upcoming online seminar The Latin American Hub for Bioimaging Through Open Hardware (LIBRE_hub) is a training network for open source bioimaging hardware in Latin America with the goal to empower regional researchers through practical workshops, seminars, [...]
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On 4th April 2024

MagneticReadoutProcessing

Home OSI² e.V. News Projects Search Software Other MagneticReadoutProcessing ScanHubNEXUS Console Application MagneticReadoutProcessing is a Python library that makes it possible to store and further process raw data from magnetometers. The focus is on the processing of point clouds, on which the points are located on a circular path around a magnetic object to be [...]
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On

ScanHub

Home OSI² e.V. News Projects Search Software Simulations Reconstruction Image processing/visualization Lab software ScanHub UKF TractographyMagneticReadoutProcessing Application Open-source platform for MR acquisition control, data management and post-processing Contributors David Schote¹, Johannes Behrens¹, Christoph Dinh¹ Contact info@brain-link.de Estimated cost 0€ Progress under development GPL 3.0, BRAIN-LINK Commercial License Resources https://github.com/brain-link ScanHub is a cloud-based platform designed [...]
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On 16th December 2023

pyCoilGen

Home OSI² e.V. News Projects Search Hardware Coils Software Simulations pyCoilGen Open BirdcageBuilderUKF Tractography Application Python based tool for generating MR coil layouts. It generates a connected, non-overlapping wire path for a given surface mesh or meshes and target field. Contributors Kevin Meyer, Philipp Amrein¹ Contact kevin@belapena.com Estimated cost Free Progress Stable Resources https://github.com/kev-m/pyCoilGen https://pycoilgen.readthedocs.io/en/stable/index.html [...]
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On 17th November 2023

Open BirdcageBuilder

Home OSI² e.V. News Projects Search Hardware design Software Open BirdcageBuilder NMRduinopyCoilGen Application Calculates first-pass capacitances to aid in construction and simulation of birdcage coils. Contributors Douglas Brantner1,2, Giuseppe Carluccio1,2, Chih-Liang Chin3, Christopher Collins1,2 Contact douglas.brantner@nyulangone.org Estimated cost Free Progress Beta 0.0.8, AGPL 3.0 License – Working, results validated against previous versions; need to update [...]
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On 17th July 2023

DL+DiReCT – Direct Cortical Thickness Estimation using Deep Learning-based Anatomy Segmentation and Cortex Parcellation

Home OSI² e.V. News Projects Search Software Image processing/visualization DL+DiReCT – Direct Cortical Thickness Estimation using Deep Learning-based Anatomy Segmentation and Cortex Parcellation Parallel transmission implant safety testbedNMRduino Application DL+DiReCT combines a deep learning-based neuroanatomy segmentation and cortex parcellation with a diffeomorphic registration technique to measure cortical thickness from T1-weighted magnetic resonance images. Contributors Michael [...]
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On 17th August 2022

Libre_hub Seminar Series

The Latin American Hub for Bioimaging Through Open Hardware (LIBRE_hub) is a training network for open source bioimaging hardware in Latin America with the goal to empower regional researchers through practical workshops, seminars, networking, and online resources adapted to local needs and re-published…

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On 23rd June 2022

OSI meets HOPE

HOPE (Hackers On Planet Earth) a conference for the hacker community, open-source community, HAM Radio community, and everything in between is happening on July 22-24 (list of speakers here) at New York City . Doug Brantner, an MRI research engineer working on sensors, electronics, software, and simulations…

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On 6th April 2022

ROAST: Realistic vOlumetric-Approach-based Simulator for Transcranial electric stimulation

Home OSI² e.V. News Projects Search Software Simulations ROAST: Realistic vOlumetric-Approach-based Simulator for Transcranial electric stimulation Halbach MRI DesignerVirtual MRI Scanner Application A fully-automated, easy-to-use toolbox for simulating and optimizing transcranial electrical stimulation Contributors Yu (Andy) Huang1 Maximilian Nentwich2 Takfarinas Medani3 Dalton Bermudez4 June Kang5 Contact andypotatohy@gmail.com Estimated cost Free Progress Stable release v3.0 GPL-3.0 [...]
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On

Halbach MRI Designer

Home OSI² e.V. News Projects Search Software Halbach MRI Designer MRI distortion phantomROAST: Realistic vOlumetric-Approach-based Simulator for Transcranial electric stimulation Application Create a Halbach MRI Magnet from parametric definitions Contributors Benjamin Menküc1, Lukas Winter2, Thomas O'Reilly3 Contact benjamin.menkuec@fh-dortmund.de Estimated cost Free Progress Stable release v0.2 Resources https://github.com/menkueclab/HalbachMRIDesigner This tool can create an OpenSCAD geometry of [...]
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On 2nd July 2020

AFNI (Analysis of Functional NeuroImages)

Home OSI² e.V. News Projects Search Software Image processing/visualization AFNI (Analysis of Functional NeuroImages) ThinWire – MRI Gradient Coil DesignHalbach array magnet for in vivo imaging Application Software for Analysis and Visualization of Functional Magnetic Resonance Neuroimages Contributors Robert Cox¹ Contact robertcox@mail.nih.gov Estimated cost Free Progress Software: released Resources https://afni.nimh.nih.gov/ AFNI (Analysis of Functional NeuroImages) is [...]
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On 9th February 2020

HealthyPi

Home OSI² e.V. News Projects Search Other hardware (non-MR) Software HealthyPi 3D SlicerOpenVnmrJ – Open Source variant of VnmrJ 4.2 Application An open-source, multi-parameter, full fledged human body vital sign monitoring HAT for Raspberry Pi as well as standalone use. Contributors Ashwin Whitchurch¹ Contact ashwin@protocentral.com Estimated cost Total price: 250$ Progress Hardware: released Software: released [...]
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On 1st May 2019

MIRT

The Michigan Image Reconstruction Toolbox (MIRT) is a collection of open source algorithms for image reconstruction (and related imaging problems) written in Mathwork’s MATLAB language.