NMRduino
NMRduino is an affordable magnetic resonance prototyping and learning tool.
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Open Hardware virtual pub from Euro-BioImaging
Join the “Open Hardware in Imaging” special Virtual Pub edition organized by Euro-BioImaging with highlights of a number of open hardware projects in biological and biomedical imaging. If willing to share your developments, please, submit your abstract before the 14th of July!
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Scalable and Modular Rf Coils
An RF coil system consisting of an 8-channel transmit (Tx) and 8-channel receive (Rx) coil arrays for 19F MRI
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CoilGen – an Open Source MR Coil Layout Generator
An automated and flexible algorithm for rapid prototyping of new MR gradient and shim coil designs.
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MRI Cage Test Set
An open-source 3d printed antenna set for MRI Faraday RF cages attenuation measurements.
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DeLINEATE: Deep Learning In Neuroimaging
A Python toolbox that aims to make it easier for psychologists and neuroscientists to do “deep learning” analyses on their neuroimaging data
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Virtual MRI Scanner
Virtual Scanner is an end-to-end hybrid Magnetic Resonance Imaging (MRI) simulator/console designed to be zero-footprint, modular, and supported by open-source standards.
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MRI distortion phantom
Modular phantom and corresponding software tools to measure distortion in MRI systems
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Yarra
Yarra is a simple and open software framework for Siemens MRI systems to facilitate data transfer for offline processing of computationally expensive algorithms.
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Open EIT – Electrical Impedance Tomography
An affordable biomedical imaging system that allows to create images based on the electrical properties of tissues.
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PyPPM – A proton precession magnetometer
Hardware and software designs that enable performing Nuclear Magnetic Resonance experiments using the Earth’s magnetic field.
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Pulseq-GPI / IMR-framework
Python-based and UI-based pulse sequence design.
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AnalyzeNNLS
A MatLab ROI-based analysis suite for multiecho MRI data. AnalyzeNNLS creates a T2 distribution from the averaged decay data.
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TAPAS – Translational Algorithms for Psychiatry – Advancing Science
A collection of software tools developed to support clinical neuromodeling, particularly computational psychiatry, computational neurology, and computational psychosomatics.
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Structured-light 3D scanner
A 3D Scanner based on structured light and stereo vision.
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DIPY – Diffusion imaging in Python
A software for computational neuroanatomy with focus on diffusion magnetic resonance imaging (dMRI) analysis. It implements a broad range of algorithms for denoising, registration, reconstruction, tracking, clustering, visualization, and statistical analysis of MRI data.
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OpenICE – Medical device interoperability platform
OpenICE is an initiative to create a community implementation of an Integrated Clinical Environment. The initiative encompasses not only software implementation but also an architecture for a wider clinical ecosystem to enable new avenues of clinical research. OpenICE seeks to integrate an inclusive…
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ScopeFun – Several lab instruments in one device
Oscilloscope, Waveform Generator, Spectrum Analyzer, Logic Analyzer and Pattern Generator in one device.
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Spinal Cord Toolbox – Image processing for multiparametric MRI
Spinal Cord Toolbox is a comprehensive software for the processing and analysis of multiparametric MRI data of the spinal cord.
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Instructional tabletop MRI scanner
The scanner design is a low-cost resource for demonstrating concepts like magnetic resonance, spatial encoding, and the Fourier transform in an educational setting. A significant part of the system design is open-source.
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qMRLab – Quantitative MRI under one umbrella
An open-source software for quantitative MR image analysis.
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Blind Source Separation of Diffusion MRI
A diffusion model-free framework with echo time dependence for free-water elimination and brain tissue microstructure characterization.
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Direct signal control – Optimal B1+ parallel transmission framework
Direct signal control provides reduced transmision field inhomogeneity allowing to recover regions of low signal without increasing imaging time or interecho spacing.
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Quantitative Magnetization Transfer MRI Optimization Toolbox
This toolbox optimizes the acquisition protocols for spoiled gradient echo qMT sensitivity against noise and also sensitivity-regularization for robustness of a qMT parameter-of-interest.
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High dynamic range processing for local contrast-enhancement in MRI
A high dynamic range image processing algorithm which can offer enhanced contrast and feature preservation for multichannel and multisequence MRI.
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Ultimate intrinsic SNR in a uniform sphere
This program allows to calculate the ultimate intrinsic SNR at the center of a uniform dielectric sphere, which may be used, for example, as an absolute reference to assess the performance of head coils with spherical phantoms.
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Hybrid MRI‐Ultrasound scannerless real‐time imaging
This project proposes a hybrid system based on a single‐element ultrasound transducer and an MR scanner to help boost temporal resolution in real‐time MRI.
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SequenceTree – Pulse sequence programming in a dynamic visual environment
A user friendly software environment for implementing MRI pulse sequences and, exporting them to actual MRI scanners.
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Pneumatic Phantom for Mimicking Respiration-Induced MRI Artifacts
An MRI compatible phantom that simulates the respiration of a human subject in an automated way. A pressure probe is used in order to communicate in continuous time to Matlab the evolution of the respiratory cycle of the subject.
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TOPPE – Rapid MR pulse sequence prototyping
TOPPE is a simple, modular framework for rapid prototyping of pulse sequences on General Electric MRI scanners.
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FID-A – Advanced MR spectroscopy processing and simulation
Advanced toolbox for design and analysis of radiofrequency (RF) pulses, and processing of magnetic resonance spectroscopy data.
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Imagining OSI2 around tapas at the ESMRMB 2017
Let’s have some food and drinks together in Barcelona.
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OpenSpinMicroscopy
Open Spin Microscopy is an open-source platform to build digital Scanning Light Sheet Microscopes (SPIM/DSLM/OPT).
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From the Pacific to the Mediterranean
The International Society for Magnetic Resonance in Medicine gave a warm welcome to OpenSourceImaging.org in its 25th annual meeting held in Hawaii (ISMRM 2017). The initiative raised interest through the two presentations and the two study group sessions offered by Lukas Winter. The next congress…
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Syringe Pump Library
Customizable high-quality syringe pumps
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R-project – Statistical computing
R is a state-of-the-art statistical computing software with powerful graphic possibilities.
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ODIN – Object-Oriented Development Interface for NMR
ODIN is a C++ software framework to develop and simulate magnetic resonance sequences.
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Open fMRI – Sharing brain MRI data
OpenfMRI.org is a project dedicated to the free and open sharing of raw MRI datasets.
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Spinach – Simulating spin dynamics
Spinach is software library for simulation of spin dynamics in large spin systems. It supports NMR, EPR, DNP, MAS, PHIP, singlet state NMR and other forms of Magnetic Resonance spectroscopy.
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EEZ H24005 – Bench Power Supply
EEZ H24005 is a power supply that provides features of middle and high range commercial devices.
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FreeSurfer
FreeSurfer is a software package for analysis and visualization of structural and functional neuroimaging data
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OpenBCI – Open-source EEG
Open-source brain-computer interface (OpenBCI) is an affordable bio-sensing system that can sample electrical activity of human body such as brain (EEG), skeletal muscle (EMG) and heart (ECG) activity.
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echOpen – Affordable Ultrasound Probe
echOpen: An open source ultrasound probe that can be connected to a smartphone, tablet or PC
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ISMRMRD – Open MR data standard
The ISMRM Raw Data format is proposed as a common MR raw data format to promote collaborations and reproducible research by facilitating the sharing of data and data processing tools.
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gpuNUFFT – GPU based fast image reconstruction
gpuNUFFT is an open-source GPU Library for reducing computational time of non-linearly sampled 3D/2D MRI data with direct Matlab interface.
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SimpleElastix – Easy image registration
SimpleElastix is a user-friendly command line based program that registers (matches/aligns) images in C++, Python, Java, R, Ruby, Octave, C#, Lua and Tcl.